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RTN4RL1 reticulon 4 receptor like 1 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121474120, updated on 22-Mar-2024

Summary

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Gene symbol
RTN4RL1
Gene description
reticulon 4 receptor like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See RTN4RL1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 12 NC_054835.1 (15301392..15373160)

Chromosome 12 - NC_054835.1Genomic Context describing neighboring genes Neighboring gene HIC ZBTB transcriptional repressor 1 Neighboring gene OVCA2 serine hydrolase domain containing Neighboring gene diphthamide biosynthesis 1 Neighboring gene replication protein A1 Neighboring gene 28S ribosomal protein S17, mitochondrial-like Neighboring gene acylphosphatase-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054835.1 Chromosome 12 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4 receptor-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054835.1 Reference ASM1834538v1 Primary Assembly

    Range
    15301392..15373160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041726944.1 → XP_041582878.1  reticulon-4 receptor-like 1

    Conserved Domains (4) summary
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:174 → 233
    LRR_8; Leucine rich repeat
    cd21340
    Location:59 → 207
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:255 → 300
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein Strain
Heading Accession and Version

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