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GNPDA2 glucosamine-6-phosphate deaminase 2 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121472987, updated on 22-Mar-2024

Summary

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Gene symbol
GNPDA2
Gene description
glucosamine-6-phosphate deaminase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See GNPDA2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 12 NC_054835.1 (63282291..63306976, complement)

Chromosome 12 - NC_054835.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like Neighboring gene GTP binding elongation factor GUF1 Neighboring gene profilin-1-like Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054835.1 Chromosome 12 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054835.1 Reference ASM1834538v1 Primary Assembly

    Range
    63282291..63306976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041724766.1 → XP_041580700.1  glucosamine-6-phosphate isomerase 2 isoform X1

    Conserved Domains (1) summary
    PRK00443
    Location:68 → 325
    nagB; glucosamine-6-phosphate deaminase; Provisional

  2. XM_041724767.1 → XP_041580701.1  glucosamine-6-phosphate isomerase 2 isoform X2

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  3. XM_041724769.1 → XP_041580703.1  glucosamine-6-phosphate isomerase 2 isoform X2

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  4. XM_041724768.1 → XP_041580702.1  glucosamine-6-phosphate isomerase 2 isoform X2

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

  5. XM_041724770.1 → XP_041580704.1  glucosamine-6-phosphate isomerase 2 isoform X2

    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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