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Asph aspartate beta-hydroxylase [ Microtus oregoni (creeping vole) ]

Gene ID: 121451482, updated on 22-Mar-2024

Summary

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Gene symbol
Asph
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus oregoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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See Asph in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Mior012 (GCF_018167655.1) Unplaced Scaffold NW_024543067.1 (15510283..15672456, complement)

NW_024543067.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene clavesin 1 Neighboring gene U1 spliceosomal RNA Neighboring gene 60 kDa heat shock protein, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024543067 Unplaced Scaffold Reference Mior012

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus oregoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mior012

Genomic

  1. NW_024543067.1 Reference Mior012

    Range
    15510283..15672456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041657012.1 → XP_041512946.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 211
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:227 → 415
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:346 → 370
    TPR; TPR repeat [structural motif]
    cl40423
    Location:414 → 633
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_041657014.1 → XP_041512948.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 196
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:212 → 400
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:331 → 355
    TPR; TPR repeat [structural motif]
    cl40423
    Location:399 → 618
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_041657008.1 → XP_041512942.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 276
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:292 → 480
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:411 → 435
    TPR; TPR repeat [structural motif]
    cl40423
    Location:479 → 698
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_041657009.1 → XP_041512943.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 261
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:277 → 465
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:396 → 420
    TPR; TPR repeat [structural motif]
    cl40423
    Location:464 → 683
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_041657005.1 → XP_041512939.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 307
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:323 → 511
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:442 → 466
    TPR; TPR repeat [structural motif]
    cl40423
    Location:510 → 729
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_041657006.1 → XP_041512940.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:70 → 300
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:316 → 504
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:435 → 459
    TPR; TPR repeat [structural motif]
    cl40423
    Location:503 → 722
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_041657010.1 → XP_041512944.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 255
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:271 → 459
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:390 → 414
    TPR; TPR repeat [structural motif]
    cl40423
    Location:458 → 677
    cupin_RmlC-like; RmlC-like cupin superfamily

  8. XM_041657007.1 → XP_041512941.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:77 → 292
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:308 → 496
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:427 → 451
    TPR; TPR repeat [structural motif]
    cl40423
    Location:495 → 714
    cupin_RmlC-like; RmlC-like cupin superfamily

  9. XM_041657011.1 → XP_041512945.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:25 → 240
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:256 → 444
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:375 → 399
    TPR; TPR repeat [structural motif]
    cl40423
    Location:443 → 662
    cupin_RmlC-like; RmlC-like cupin superfamily

  10. XM_041657015.1 → XP_041512949.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Conserved Domains (1) summary
    pfam05279
    Location:77 → 252
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_041657018.1 → XP_041512952.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    Conserved Domains (1) summary
    pfam05279
    Location:25 → 200
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  12. XM_041657016.1 → XP_041512950.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    Conserved Domains (1) summary
    pfam05279
    Location:25 → 215
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  13. XM_041657017.1 → XP_041512951.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Conserved Domains (1) summary
    pfam05279
    Location:77 → 169
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein
Heading Accession and Version

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