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LOC121440268 host cell factor 1 [ Microtus oregoni (creeping vole) ]

Gene ID: 121440268, updated on 16-Nov-2023

Summary

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Gene symbol
LOC121440268
Gene description
host cell factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus oregoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
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Genomic context

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See LOC121440268 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Mior012 (GCF_018167655.1) Unplaced Scaffold NW_024543954.1 (789643..822930, complement)

NW_024543954.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10 Neighboring gene N-acylglucosamine 2-epimerase Neighboring gene transmembrane protein 187-like Neighboring gene interleukin-1 receptor-associated kinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024543954 Unplaced Scaffold Reference Mior012

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus oregoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mior012

Genomic

  1. NW_024543954.1 Reference Mior012

    Range
    789643..822930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041641029.1 → XP_041496963.1  host cell factor 1 isoform X5

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1384 → 1549
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1844 → 1873
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:401 → 705
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_041641028.1 → XP_041496962.1  host cell factor 1 isoform X4

    Conserved Domains (4) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1865 → 1894
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_041641027.1 → XP_041496961.1  host cell factor 1 isoform X3

    Conserved Domains (4) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1866 → 1895
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_041641026.1 → XP_041496960.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1450 → 1615
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1909 → 1938
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_041641025.1 → XP_041496959.1  host cell factor 1 isoform X1

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1450 → 1615
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1910 → 1939
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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