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Aire autoimmune regulator [ Microtus oregoni (creeping vole) ]

Gene ID: 121435533, updated on 22-Mar-2024

Summary

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Gene symbol
Aire
Gene description
autoimmune regulator
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus oregoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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See Aire in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Mior012 (GCF_018167655.1) Unplaced Scaffold NW_024543220.1 (17510570..17521690)

NW_024543220.1Genomic Context describing neighboring genes Neighboring gene inducible T cell costimulator ligand Neighboring gene DNA methyltransferase 3 like Neighboring gene phosphofructokinase, liver type Neighboring gene cilia and flagella associated protein 410

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024543220 Unplaced Scaffold Reference Mior012

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autoimmune regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus oregoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mior012

Genomic

  1. NW_024543220.1 Reference Mior012

    Range
    17510570..17521690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041634940.1 → XP_041490874.1  autoimmune regulator isoform X1

    Conserved Domains (3) summary
    cd15539
    Location:300 → 342
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:435 → 477
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  2. XM_041634944.1 → XP_041490878.1  autoimmune regulator isoform X5

    Conserved Domains (3) summary
    cd15539
    Location:300 → 342
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:374 → 416
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  3. XM_041634941.1 → XP_041490875.1  autoimmune regulator isoform X2

    Conserved Domains (3) summary
    cd15539
    Location:299 → 341
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:434 → 476
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  4. XM_041634945.1 → XP_041490879.1  autoimmune regulator isoform X6

    Conserved Domains (3) summary
    cd15539
    Location:299 → 341
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:373 → 415
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  5. XM_041634942.1 → XP_041490876.1  autoimmune regulator isoform X3

    Conserved Domains (3) summary
    cd15539
    Location:296 → 338
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:431 → 473
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  6. XM_041634946.1 → XP_041490880.1  autoimmune regulator isoform X7

    Conserved Domains (3) summary
    cd15539
    Location:296 → 338
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:370 → 412
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  7. XM_041634943.1 → XP_041490877.1  autoimmune regulator isoform X4

    Conserved Domains (3) summary
    cd15539
    Location:295 → 337
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:430 → 472
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain

  8. XM_041634947.1 → XP_041490881.1  autoimmune regulator isoform X8

    Conserved Domains (3) summary
    cd15539
    Location:295 → 337
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:369 → 411
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    cl02536
    Location:198 → 264
    SAND; SAND domain
Nucleotide Protein
Heading Accession and Version

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