U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121392895 VISTA enhancer mm1893 [ Mus musculus (house mouse) ]

Gene ID: 121392895, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC121392895
Gene description
VISTA enhancer mm1893
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr2085
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121392895 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (15565766..15570471)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1947 Neighboring gene predicted gene, 31066 Neighboring gene STARR-seq mESC enhancer starr_33720 Neighboring gene VISTA enhancer mm1862 Neighboring gene STARR-seq mESC enhancer starr_33721 Neighboring gene predicted gene 9512 Neighboring gene STARR-seq mESC enhancer starr_33722 Neighboring gene STARR-seq mESC enhancer starr_33723 Neighboring gene VISTA enhancers mm1179 and mm1887 Neighboring gene STARR-seq mESC enhancer starr_33728 Neighboring gene STARR-seq mESC enhancer starr_33729 Neighboring gene VISTA enhancer mm1896 Neighboring gene STARR-seq mESC enhancer starr_33730 Neighboring gene predicted gene, 20043 Neighboring gene STARR-seq mESC enhancer starr_33731 Neighboring gene STARR-seq mESC enhancer starr_33733 Neighboring gene predicted gene 6556 Neighboring gene GLI-Kruppel family member GLI3 Neighboring gene VISTA enhancer mm1912 Neighboring gene VISTA enhancer mm652 Neighboring gene VISTA enhancer mm2028 Neighboring gene VISTA enhancer mm1935 Neighboring gene predicted gene, 57607

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Other Names

  • regulatory region 2085

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_074551.1 

    Range
    101..4806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    15565766..15570471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version