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LGI3 leucine rich repeat LGI family member 3 [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

Gene ID: 121366018, updated on 3-Aug-2024

Summary

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Gene symbol
LGI3
Gene description
leucine rich repeat LGI family member 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Pyrgilauda ruficollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
Orthologs
human mouse all
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Genomic context

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See LGI3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024510877.1 (1226422..1230238)

NW_024510877.1Genomic Context describing neighboring genes Neighboring gene pulmonary surfactant-associated protein C-like Neighboring gene pulmonary surfactant-associated protein C-like Neighboring gene receptor accessory protein 4 Neighboring gene HR lysine demethylase and nuclear receptor corepressor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024510877 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat LGI family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759013v1 Primary Assembly

Genomic

  1. NW_024510877.1 Reference ASM1759013v1 Primary Assembly

    Range
    1226422..1230238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041490681.1 → XP_041346615.1  leucine-rich repeat LGI family member 3 isoform X1

    Conserved Domains (3) summary
    TIGR00864
    Location:148 → 223
    PCC; polycystin cation channel protein
    COG4886
    Location:64 → 177
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:95 → 118
    LRR_1; leucine-rich repeat [structural motif]

  2. XM_041490682.1 → XP_041346616.1  leucine-rich repeat LGI family member 3 isoform X2

    Conserved Domains (3) summary
    TIGR00864
    Location:95 → 170
    PCC; polycystin cation channel protein
    sd00031
    Location:42 → 65
    LRR_1; leucine-rich repeat [structural motif]
    cl39015
    Location:35 → 124
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
Heading Accession and Version

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