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EBF2 EBF transcription factor 2 [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

Gene ID: 121366002, updated on 3-Aug-2024

Summary

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Gene symbol
EBF2
Gene description
EBF transcription factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pyrgilauda ruficollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
Orthologs
human mouse all
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Genomic context

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See EBF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024510877.1 (172963..296676)

NW_024510877.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit Balpha Neighboring gene uncharacterized LOC121365984 Neighboring gene cell division cycle associated 2 Neighboring gene potassium channel tetramerization domain containing 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024510877 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor COE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759013v1 Primary Assembly

Genomic

  1. NW_024510877.1 Reference ASM1759013v1 Primary Assembly

    Range
    172963..296676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041490663.1 → XP_041346597.1  transcription factor COE2 isoform X1

    Conserved Domains (2) summary
    cd11606
    Location:34 → 246
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:253 → 337
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...

  2. XM_041490664.1 → XP_041346598.1  transcription factor COE2 isoform X2

    Conserved Domains (3) summary
    cd01175
    Location:253 → 337
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:20 → 246
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:338 → 381
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
Nucleotide Protein
Heading Accession and Version

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