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SGCA sarcoglycan alpha [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

Gene ID: 121352466, updated on 3-Aug-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Pyrgilauda ruficollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024517984.1 (667038..670920, complement)

NW_024517984.1Genomic Context describing neighboring genes Neighboring gene all-trans-retinol 13,14-reductase-like Neighboring gene collagen type I alpha 1 chain Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024517984 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759013v1 Primary Assembly

Genomic

  1. NW_024517984.1 Reference ASM1759013v1 Primary Assembly

    Range
    667038..670920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041465432.1 → XP_041321366.1  alpha-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam05510
    Location:67 → 288
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_041465430.1 → XP_041321364.1  alpha-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam05510
    Location:35 → 359
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_041465431.1 → XP_041321365.1  alpha-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam05510
    Location:11 → 309
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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