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TKT transketolase [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121347286, updated on 3-Aug-2024

Summary

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Gene symbol
TKT
Gene description
transketolase
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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See TKT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024506993.1 (13954020..13976141)

NW_024506993.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 D Neighboring gene decapping mRNA 1A Neighboring gene transmembrane protein 40 Neighboring gene FA complementation group D2 Neighboring gene BRICK1 subunit of SCAR/WAVE actin nucleating complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024506993 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribose phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024506993.1 Reference ASM1759005v1 Primary Assembly

    Range
    13954020..13976141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041425842.1 → XP_041281776.1  transketolase isoform X1

    Conserved Domains (1) summary
    PRK05899
    Location:8 → 620
    PRK05899; transketolase; Reviewed

  2. XM_041425843.1 → XP_041281777.1  transketolase isoform X2

    Conserved Domains (1) summary
    PRK05899
    Location:9 → 594
    PRK05899; transketolase; Reviewed
Nucleotide Protein
Heading Accession and Version

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