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SYNJ2 synaptojanin 2 [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121346186, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024505892.1 (14096241..14163360)

NW_024505892.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024505892 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024505892.1 Reference ASM1759005v1 Primary Assembly

    Range
    14096241..14163360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041423752.1 → XP_041279686.1  synaptojanin-2 isoform X1

    Conserved Domains (5) summary
    PTZ00249
    Location:1330 → 1481
    PTZ00249; variable surface protein Vir28; Provisional
    PHA03377
    Location:1070 → 1422
    PHA03377; EBNA-3C; Provisional
    cd09099
    Location:529 → 861
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    COG5329
    Location:26 → 488
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:873 → 1008
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_041423753.1 → XP_041279687.1  synaptojanin-2 isoform X2

    Conserved Domains (5) summary
    PTZ00249
    Location:1205 → 1356
    PTZ00249; variable surface protein Vir28; Provisional
    PHA03377
    Location:945 → 1297
    PHA03377; EBNA-3C; Provisional
    cd09099
    Location:404 → 736
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    COG5329
    Location:2 → 363
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:748 → 883
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_041423755.1 → XP_041279689.1  synaptojanin-2 isoform X3

    Conserved Domains (5) summary
    PTZ00249
    Location:1044 → 1195
    PTZ00249; variable surface protein Vir28; Provisional
    PHA03377
    Location:784 → 1136
    PHA03377; EBNA-3C; Provisional
    cd09099
    Location:243 → 575
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    COG5329
    Location:4 → 202
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:587 → 722
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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