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PIPOX pipecolic acid and sarcosine oxidase [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121345879, updated on 3-Aug-2024

Summary

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Gene symbol
PIPOX
Gene description
pipecolic acid and sarcosine oxidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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See PIPOX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024505339.1 (1308827..1311534, complement)

NW_024505339.1Genomic Context describing neighboring genes Neighboring gene crystallin beta A1 Neighboring gene myosin XVIIIA Neighboring gene seizure related 6 homolog Neighboring gene PHD finger protein 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024505339 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-pipecolate oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sarcosine oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-lysine catabolic process to acetyl-CoA via L-pipecolate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal sarcosine oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024505339.1 Reference ASM1759005v1 Primary Assembly

    Range
    1308827..1311534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041423168.1 → XP_041279102.1  peroxisomal sarcosine oxidase

    Conserved Domains (1) summary
    TIGR01377
    Location:12 → 384
    soxA_mon; sarcosine oxidase, monomeric form
Nucleotide Protein
Heading Accession and Version

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