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SDC1 syndecan 1 [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121344243, updated on 3-Aug-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024497629.1 (3784913..3809953)

NW_024497629.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1-like Neighboring gene pumilio RNA binding family member 2 Neighboring gene protein LYRIC-like Neighboring gene lysosomal protein transmembrane 4 alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024497629 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024497629.1 Reference ASM1759005v1 Primary Assembly

    Range
    3784913..3809953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041420024.1 → XP_041275958.1  syndecan-1

    Conserved Domains (1) summary
    smart00294
    Location:332 → 350
    4.1m; putative band 4.1 homologues' binding motif
Nucleotide Protein
Heading Accession and Version

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