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SGCD sarcoglycan delta [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121332210, updated on 3-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024498573.1 (4796332..5102649, complement)

NW_024498573.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 homolog Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024498573 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024498573.1 Reference ASM1759005v1 Primary Assembly

    Range
    4796332..5102649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041397415.1 → XP_041253349.1  delta-sarcoglycan isoform X1

  2. XM_041397414.1 → XP_041253348.1  delta-sarcoglycan isoform X1

  3. XM_041397419.1 → XP_041253353.1  delta-sarcoglycan isoform X4

  4. XM_041397416.1 → XP_041253350.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_041397418.1 → XP_041253352.1  delta-sarcoglycan isoform X3

  6. XM_041397413.1 → XP_041253347.1  delta-sarcoglycan isoform X1

  7. XM_041397420.1 → XP_041253354.1  delta-sarcoglycan isoform X4

  8. XM_041397417.1 → XP_041253351.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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