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LOC121327002 prolyl 3-hydroxylase 2-like [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121327002, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121327002
Gene description
prolyl 3-hydroxylase 2-like
See related
EnsemblRapid:ENSPAHG00005017923
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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Genomic context

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See LOC121327002 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 14 NC_054547.1 (37955597..37994067)

Chromosome 14 - NC_054547.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S3-like Neighboring gene claudin-1-like Neighboring gene tumor protein 63-like Neighboring gene tumor protein p63 regulated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054547.1 Chromosome 14 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054547.1 Reference ASM1765450v1 Primary Assembly

    Range
    37955597..37994067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041270735.1 → XP_041126669.1  prolyl 3-hydroxylase 2-like isoform X1

    Related
    ENSPAHP00005025464.1, ENSPAHT00005027199.1
    Conserved Domains (1) summary
    smart00702
    Location:454 → 652
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_041270736.1 → XP_041126670.1  prolyl 3-hydroxylase 2-like isoform X2

    Conserved Domains (1) summary
    smart00702
    Location:315 → 513
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  3. XM_041270738.1 → XP_041126672.1  prolyl 3-hydroxylase 2-like isoform X3

    Conserved Domains (1) summary
    smart00702
    Location:289 → 487
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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