U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121324680 delta-sarcoglycan-like [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121324680, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC121324680
Gene description
delta-sarcoglycan-like
See related
EnsemblRapid:ENSPAHG00005013014
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121324680 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 12 NC_054545.1 (37854816..37967318, complement)

Chromosome 12 - NC_054545.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene TBC1 domain family member 5 homolog A-like Neighboring gene 39S ribosomal protein L22, mitochondrial-like Neighboring gene gem-associated protein 5-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054545.1 Chromosome 12 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054545.1 Reference ASM1765450v1 Primary Assembly

    Range
    37854816..37967318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041266793.1 → XP_041122727.1  delta-sarcoglycan-like

  2. XM_041266794.1 → XP_041122728.1  delta-sarcoglycan-like

  3. XM_041266795.1 → XP_041122729.1  delta-sarcoglycan-like

    Related
    ENSPAHP00005018537.1, ENSPAHT00005019714.1

  4. XM_041266792.1 → XP_041122726.1  delta-sarcoglycan-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases