U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tab2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121316944, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
tab2
Gene description
TGF-beta activated kinase 1 (MAP3K7) binding protein 2
See related
EnsemblRapid:ENSPAHG00005032523
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tab2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 6 NC_054539.1 (17390251..17435640, complement)

Chromosome 6 - NC_054539.1Genomic Context describing neighboring genes Neighboring gene endoribonuclease ZC3H12A-like Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 4 Neighboring gene uncharacterized LOC121316946 Neighboring gene uronyl 2-sulfotransferase a Neighboring gene SAM and SH3 domain-containing protein 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054539.1 Chromosome 6 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054539.1 Reference ASM1765450v1 Primary Assembly

    Range
    17390251..17435640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041252340.1 → XP_041108274.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X4

    Related
    ENSPAHP00005043427.1, ENSPAHT00005048503.1
    Conserved Domains (3) summary
    smart00547
    Location:692 → 715
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:693 → 712
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  2. XM_041252338.1 → XP_041108272.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X2

    Conserved Domains (3) summary
    smart00547
    Location:718 → 741
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:719 → 738
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  3. XM_041252337.1 → XP_041108271.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X1

    Related
    ENSPAHP00005043428.1, ENSPAHT00005048504.1
    Conserved Domains (3) summary
    smart00547
    Location:719 → 742
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    sd00029
    Location:720 → 739
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  4. XM_041252339.1 → XP_041108273.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X3

    Conserved Domains (3) summary
    smart00547
    Location:707 → 730
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:708 → 727
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl21463
    Location:9 → 38
    UBA_like_SF; UBA domain-like superfamily

  5. XM_041252342.1 → XP_041108276.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X5

    Conserved Domains (2) summary
    smart00547
    Location:645 → 668
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:646 → 665
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.