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pigm phosphatidylinositol glycan anchor biosynthesis, class M [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121313064, updated on 22-Mar-2024

Summary

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Gene symbol
pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis, class M
See related
EnsemblRapid:ENSPAHG00005009535
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
Orthologs
human zebrafish all
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Genomic context

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See pigm in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 3 NC_054536.1 (37843612..37851238, complement)

Chromosome 3 - NC_054536.1Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor repressor-like Neighboring gene exocyst complex component 3-like Neighboring gene programmed cell death protein 6-like Neighboring gene ankyrin repeat and SAM domain-containing protein 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054536.1 Chromosome 3 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054536.1 Reference ASM1765450v1 Primary Assembly

    Range
    37843612..37851238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041245202.1 → XP_041101136.1  GPI mannosyltransferase 1

    Related
    ENSPAHP00005013699.1, ENSPAHT00005014449.1
    Conserved Domains (1) summary
    cl21590
    Location:12 → 423
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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