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hic1 hypermethylated in cancer 1 [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121308703, updated on 22-Mar-2024

Summary

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Gene symbol
hic1
Gene description
hypermethylated in cancer 1
See related
EnsemblRapid:ENSPAHG00005009909
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
Orthologs
human zebrafish all
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Genomic context

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See hic1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) Unplaced Scaffold NW_024472252.1 (1326953..1347817)

NW_024472252.1Genomic Context describing neighboring genes Neighboring gene TAO kinase 1a Neighboring gene TSR1 ribosome maturation factor Neighboring gene SMG6 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC121308662 Neighboring gene uncharacterized LOC121308705

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024472252 Unplaced Scaffold Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NW_024472252.1 Reference ASM1765450v1 Primary Assembly

    Range
    1326953..1347817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041241273.1 → XP_041097207.1  hypermethylated in cancer 1 protein isoform X3

    Related
    ENSPAHP00005014260.1, ENSPAHT00005015064.1
    Conserved Domains (4) summary
    smart00355
    Location:545 → 567
    ZnF_C2H2; zinc finger
    COG5048
    Location:571 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:547 → 567
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 127
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  2. XM_041241271.1 → XP_041097205.1  hypermethylated in cancer 1 protein isoform X1

    Conserved Domains (4) summary
    smart00355
    Location:597 → 619
    ZnF_C2H2; zinc finger
    COG5048
    Location:623 → 671
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:599 → 619
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:59 → 179
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  3. XM_041241272.1 → XP_041097206.1  hypermethylated in cancer 1 protein isoform X2

    Related
    ENSPAHP00005014241.1, ENSPAHT00005015042.1
    Conserved Domains (4) summary
    smart00355
    Location:568 → 590
    ZnF_C2H2; zinc finger
    COG5048
    Location:594 → 642
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:570 → 590
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:30 → 150
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  4. XM_041241274.1 → XP_041097208.1  hypermethylated in cancer 1 protein isoform X3

    Related
    ENSPAHP00005014249.1, ENSPAHT00005015051.1
    Conserved Domains (4) summary
    smart00355
    Location:545 → 567
    ZnF_C2H2; zinc finger
    COG5048
    Location:571 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:547 → 567
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 127
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
Nucleotide Protein
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