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LOC121304211 kin of IRRE-like protein 1 [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121304211, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121304211
Gene description
kin of IRRE-like protein 1
See related
EnsemblRapid:ENSPAHG00005027466
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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Genomic context

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See LOC121304211 in Genome Data Viewer
Location:
chromosome: 37
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 37 NC_054570.1 (987597..1002882)

Chromosome 37 - NC_054570.1Genomic Context describing neighboring genes Neighboring gene IgGFc-binding protein-like Neighboring gene IgGFc-binding protein-like Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene amyloid-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054570.1 Chromosome 37 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054570.1 Reference ASM1765450v1 Primary Assembly

    Range
    987597..1002882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041235204.1 → XP_041091138.1  kin of IRRE-like protein 1

    Related
    ENSPAHP00005036583.1, ENSPAHT00005040804.1
    Conserved Domains (3) summary
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd00096
    Location:407 → 411
    Ig; Ig strand B [structural motif]
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
Nucleotide Protein
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