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LOC121299985 crk-like protein [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121299985, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121299985
Gene description
crk-like protein
See related
EnsemblRapid:ENSPAHG00005031668
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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Genomic context

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See LOC121299985 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 25 NC_054558.1 (18165495..18172385, complement)

Chromosome 25 - NC_054558.1Genomic Context describing neighboring genes Neighboring gene calcineurin-binding protein cabin-1-like Neighboring gene T-box-containing protein TBX6L-like Neighboring gene kelch-like protein 22 Neighboring gene mediator of RNA polymerase II transcription subunit 15-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054558.1 Chromosome 25 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054558.1 Reference ASM1765450v1 Primary Assembly

    Range
    18165495..18172385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041228292.1 → XP_041084226.1  crk-like protein

    Related
    ENSPAHP00005042341.1, ENSPAHT00005047229.1
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:235 → 291
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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