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TNPO1-DT TNPO1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 121232377, updated on 28-Oct-2023

Summary

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Official Symbol
TNPO1-DTprovided by HGNC
Official Full Name
TNPO1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40328
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02056
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Genomic context

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See TNPO1-DT in Genome Data Viewer
Location:
5q13.2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (72571115..72816548, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (73052248..73297697, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22649 Neighboring gene Y-box binding protein 1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22651 Neighboring gene zinc finger protein 366 Neighboring gene Sharpr-MPRA regulatory region 3669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16082 Neighboring gene uncharacterized LOC102503427 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22652 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:71930309-71930809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72004631-72005132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72005133-72005632 Neighboring gene ribosomal protein L7 pseudogene 22 Neighboring gene H2B.L histone variant 1, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22653 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16083 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22655 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22656 Neighboring gene transportin 1 Neighboring gene ribosomal protein L35a pseudogene 13 Neighboring gene microRNA 4804

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • CTC-347C20.2
  • long intergenic non-protein coding RNA 2056

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105007.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  2. NR_186495.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC035140, AC063979

  3. NR_186510.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  4. NR_186511.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  5. NR_186512.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  6. NR_186513.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  7. NR_186514.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  8. NR_186515.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  9. NR_186516.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  10. NR_186517.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  11. NR_186518.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  12. NR_186519.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  13. NR_186520.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  14. NR_186521.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  15. NR_186522.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  16. NR_186523.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  17. NR_186524.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020896, AC035140, AC063979

  18. NR_186525.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC035140, AC063979

  19. NR_186526.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC035140, AC063979

  20. NR_186527.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC035140, AC063979

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    72571115..72816548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    73052248..73297697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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