U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pspc1 paraspeckle component 1 [ Toxotes jaculatrix (banded archerfish) ]

Gene ID: 121177769, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pspc1
Gene description
paraspeckle component 1
See related
EnsemblRapid:ENSTJCG00005022661
Gene type
protein coding
RefSeq status
MODEL
Organism
Toxotes jaculatrix
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Toxotidae; Toxotes
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pspc1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fToxJac2.pri (GCF_017976425.1) 24 NC_054417.1 (9115509..9128313, complement)

Chromosome 24 - NC_054417.1Genomic Context describing neighboring genes Neighboring gene lectin-like Neighboring gene neurobeachin-like 1 Neighboring gene rho GTPase-activating protein 20-like Neighboring gene ly6/PLAUR domain-containing protein 6-like Neighboring gene metabolism of cobalamin associated Da

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054417.1 Chromosome 24 Reference fToxJac2.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
paraspeckle component 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Toxotes jaculatrix Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fToxJac2.pri

Genomic

  1. NC_054417.1 Reference fToxJac2.pri

    Range
    9115509..9128313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041032101.1 → XP_040888035.1  paraspeckle component 1 isoform X4

    Conserved Domains (2) summary
    TIGR01628
    Location:93 → 223
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12949
    Location:236 → 329
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

  2. XM_041032100.1 → XP_040888034.1  paraspeckle component 1 isoform X4

    Conserved Domains (2) summary
    TIGR01628
    Location:93 → 223
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12949
    Location:236 → 329
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

  3. XM_041032098.1 → XP_040888032.1  paraspeckle component 1 isoform X2

    Related
    ENSTJCP00005053187.1, ENSTJCT00005055581.1
    Conserved Domains (3) summary
    TIGR01628
    Location:84 → 222
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:92 → 158
    RRM; RNA recognition motif
    cd12949
    Location:236 → 329
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

  4. XM_041032097.1 → XP_040888031.1  paraspeckle component 1 isoform X1

    Related
    ENSTJCP00005053185.1, ENSTJCT00005055579.1
    Conserved Domains (3) summary
    smart00360
    Location:92 → 158
    RRM; RNA recognition motif
    COG0724
    Location:77 → 224
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12949
    Location:236 → 329
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

  5. XM_041032099.1 → XP_040888033.1  paraspeckle component 1 isoform X3

    Conserved Domains (2) summary
    TIGR01628
    Location:93 → 223
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12949
    Location:236 → 329
    NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

RNA

  1. XR_005893365.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.