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Bhmt betaine-homocysteine methyltransferase [ Mus musculus (house mouse) ]

Gene ID: 12116, updated on 28-Oct-2024

Summary

Official Symbol
Bhmtprovided by MGI
Official Full Name
betaine-homocysteine methyltransferaseprovided by MGI
Primary source
MGI:MGI:1339972
See related
Ensembl:ENSMUSG00000074768 AllianceGenome:MGI:1339972
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Enables betaine-homocysteine S-methyltransferase activity. Acts upstream of or within methionine biosynthetic process. Predicted to be located in extracellular exosome and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in cytosol. Is expressed in several structures, including brain ventricle and choroid plexus; early conceptus; gonad; liver; and male reproductive gland or organ. Human ortholog(s) of this gene implicated in cerebral infarction and pulmonary embolism. Orthologous to human BHMT (betaine--homocysteine S-methyltransferase). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in liver adult (RPKM 336.5), liver E18 (RPKM 100.1) and 1 other tissue See more
Orthologs
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Genomic context

See Bhmt in Genome Data Viewer
Location:
13 C3; 13 47.87 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (93753399..93774266, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (93616891..93637758, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene cofilin 1, non-muscle pseudogene Neighboring gene predicted gene, 31977 Neighboring gene STARR-seq mESC enhancer starr_35284 Neighboring gene STARR-seq mESC enhancer starr_35285 Neighboring gene STARR-seq mESC enhancer starr_35286 Neighboring gene betaine-homocysteine methyltransferase 2 Neighboring gene STARR-seq mESC enhancer starr_35293 Neighboring gene dimethylglycine dehydrogenase precursor Neighboring gene expressed sequence AW495222

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (3)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC46866, MGC117976

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables betaine-homocysteine S-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables betaine-homocysteine S-methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables betaine-homocysteine S-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in 'de novo' L-methionine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in L-methionine salvage IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in L-methionine salvage ISO
Inferred from Sequence Orthology
more info
 
involved_in amino-acid betaine catabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in amino-acid betaine metabolic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within methionine biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in methionine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
betaine--homocysteine S-methyltransferase 1
NP_057877.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016668.3NP_057877.1  betaine--homocysteine S-methyltransferase 1

    See identical proteins and their annotated locations for NP_057877.1

    Status: VALIDATED

    Source sequence(s)
    AI114914, AK077108, BG078929, BY773713, CB948151
    Consensus CDS
    CCDS36748.1
    UniProtKB/Swiss-Prot
    O35490, Q3UEM1, Q3UL72, Q561N0
    Related
    ENSMUSP00000096912.5, ENSMUST00000099309.6
    Conserved Domains (1) summary
    pfam02574
    Location:23314
    S-methyl_trans; Homocysteine S-methyltransferase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    93753399..93774266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)