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colt carnitine/acylcarnitine carrier protein colt, mitochondrial [ Lepeophtheirus salmonis (salmon louse) ]

Gene ID: 121128701, updated on 3-Jul-2024

Summary

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Gene symbol
colt
Gene description
carnitine/acylcarnitine carrier protein colt, mitochondrial
See related
EnsemblRapid:LOC121128701
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepeophtheirus salmonis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Siphonostomatoida; Caligidae; Lepeophtheirus
Orthologs
fruit fly all
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Genomic context

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See colt in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
100 current UVic_Lsal_1.1 (GCF_016086655.2) 13 NC_052143.1 (7358775..7398896)

Chromosome 13 - NC_052143.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121128635 Neighboring gene uncharacterized LOC121127885 Neighboring gene GDP-D-glucose phosphorylase 1-like Neighboring gene uncharacterized LOC121128702 Neighboring gene uncharacterized LOC121128766 Neighboring gene RNA exonuclease 1 homolog Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052143.1 Chromosome 13 Reference UVic_Lsal_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
congested-like trachea protein
Names
putative protein, similar to XP_002413523.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepeophtheirus salmonis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UVic_Lsal_1.1 Primary Assembly

Genomic

  1. NC_052143.1 Reference UVic_Lsal_1.1 Primary Assembly

    Range
    7358775..7398896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040724291.1 → XP_040580225.1  congested-like trachea protein

    UniProtKB/TrEMBL
    A0A0K2TDS7, C1BVB1
    Related
    XP_040580225.1, XM_040724291.1
    Conserved Domains (2) summary
    PTZ00168
    Location:11 → 139
    PTZ00168; mitochondrial carrier protein; Provisional
    PTZ00169
    Location:113 → 266
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

  2. XM_040724292.1 → XP_040580226.1  congested-like trachea protein

    UniProtKB/TrEMBL
    A0A0K2TDS7, C1BVB1
    Related
    XP_040580226.1, XM_040724292.1
    Conserved Domains (2) summary
    PTZ00168
    Location:11 → 139
    PTZ00168; mitochondrial carrier protein; Provisional
    PTZ00169
    Location:113 → 266
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
Nucleotide Protein
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