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HCFC1 host cell factor C1 [ Puma yagouaroundi (jaguarundi) ]

Gene ID: 121025079, updated on 22-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma yagouaroundi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current PumYag (GCF_014898765.1) Unplaced Scaffold NW_024420301.1 (613795..637216)

NW_024420301.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene Rho GTPase activating protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024420301 Unplaced Scaffold Reference PumYag Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma yagouaroundi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumYag Primary Assembly

Genomic

  1. NW_024420301.1 Reference PumYag Primary Assembly

    Range
    613795..637216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040467479.1 → XP_040323413.1  host cell factor 1 isoform X5

    Conserved Domains (3) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  2. XM_040467475.1 → XP_040323409.1  host cell factor 1 isoform X1

    Conserved Domains (4) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1904 → 1933
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  3. XM_040467476.1 → XP_040323410.1  host cell factor 1 isoform X2

    Conserved Domains (4) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1860 → 1889
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  4. XM_040467477.1 → XP_040323411.1  host cell factor 1 isoform X3

    Conserved Domains (4) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1859 → 1888
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  5. XM_040467478.1 → XP_040323412.1  host cell factor 1 isoform X4

    Conserved Domains (4) summary
    PHA03255
    Location:614 → 754
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1791 → 1820
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  6. XM_040467480.1 → XP_040323414.1  host cell factor 1 isoform X6

    Conserved Domains (1) summary
    cd00063
    Location:1557 → 1586
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
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