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SGCD sarcoglycan delta [ Bufo bufo (common toad) ]

Gene ID: 121007792, updated on 22-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSBBFG00005002126
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo bufo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aBufBuf1.1 (GCF_905171765.1) 1 NC_053389.1 (279702144..280538235, complement)

Chromosome 1 - NC_053389.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene mediator complex subunit 7 Neighboring gene uncharacterized LOC121007809 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053389.1 Chromosome 1 Reference aBufBuf1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aBufBuf1.1

Genomic

  1. NC_053389.1 Reference aBufBuf1.1

    Range
    279702144..280538235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040440010.1 → XP_040295944.1  delta-sarcoglycan

  2. XM_040440019.1 → XP_040295953.1  delta-sarcoglycan

  3. XM_040440029.1 → XP_040295963.1  delta-sarcoglycan

  4. XM_040440002.1 → XP_040295936.1  delta-sarcoglycan

    Related
    ENSBBFP00005003046.1, ENSBBFT00005003263.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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