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LOC121004972 pulmonary surfactant-associated protein D-like [ Bufo bufo (common toad) ]

Gene ID: 121004972, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121004972
Gene description
pulmonary surfactant-associated protein D-like
See related
EnsemblRapid:ENSBBFG00005021440
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo bufo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
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Genomic context

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See LOC121004972 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
100 current aBufBuf1.1 (GCF_905171765.1) 6 NC_053394.1 (219998360..220110654)

Chromosome 6 - NC_053394.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2 Neighboring gene U2 spliceosomal RNA Neighboring gene RasGEF domain family member 1A Neighboring gene collectin-43-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053394.1 Chromosome 6 Reference aBufBuf1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aBufBuf1.1

Genomic

  1. NC_053394.1 Reference aBufBuf1.1

    Range
    219998360..220110654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040437447.1 → XP_040293381.1  pulmonary surfactant-associated protein D-like

    Related
    ENSBBFP00005028935.1, ENSBBFT00005032523.1
    Conserved Domains (2) summary
    pfam09006
    Location:107 → 152
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerisation
    cl02432
    Location:145 → 260
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_040437448.1 → XP_040293382.1  pulmonary surfactant-associated protein D-like

    Conserved Domains (2) summary
    pfam09006
    Location:107 → 152
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerisation
    cl02432
    Location:145 → 260
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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