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DERA deoxyribose-phosphate aldolase [ Bufo bufo (common toad) ]

Gene ID: 121003415, updated on 22-Mar-2024

Summary

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Gene symbol
DERA
Gene description
deoxyribose-phosphate aldolase
See related
EnsemblRapid:ENSBBFG00005009334
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo bufo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human mouse all
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Genomic context

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See DERA in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aBufBuf1.1 (GCF_905171765.1) 1 NC_053389.1 (217752943..217779131)

Chromosome 1 - NC_053389.1Genomic Context describing neighboring genes Neighboring gene EGFR pathway substrate 8, signaling adaptor Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene uncharacterized LOC121003425 Neighboring gene solute carrier family 15 member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053389.1 Chromosome 1 Reference aBufBuf1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aBufBuf1.1

Genomic

  1. NC_053389.1 Reference aBufBuf1.1

    Range
    217752943..217779131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040435261.1 → XP_040291195.1  deoxyribose-phosphate aldolase

    Related
    ENSBBFP00005013673.1, ENSBBFT00005014524.1
    Conserved Domains (1) summary
    cd00959
    Location:50 → 277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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