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KIRREL3 kirre like nephrin family adhesion molecule 3 [ Bufo bufo (common toad) ]

Gene ID: 121000928, updated on 22-Mar-2024

Summary

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Gene symbol
KIRREL3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSBBFG00005004442
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo bufo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human mouse all
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Genomic context

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See KIRREL3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
100 current aBufBuf1.1 (GCF_905171765.1) 1 NC_053389.1 (165575275..166461384, complement)

Chromosome 1 - NC_053389.1Genomic Context describing neighboring genes Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like Neighboring gene uncharacterized LOC121000945 Neighboring gene uncharacterized LOC121000938 Neighboring gene uncharacterized LOC120997867 Neighboring gene ETS proto-oncogene 1, transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053389.1 Chromosome 1 Reference aBufBuf1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aBufBuf1.1

Genomic

  1. NC_053389.1 Reference aBufBuf1.1

    Range
    165575275..166461384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040431744.1 → XP_040287678.1  kin of IRRE-like protein 3 isoform X2

    Related
    ENSBBFP00005006620.1, ENSBBFT00005007017.1
    Conserved Domains (3) summary
    smart00408
    Location:160 → 230
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:338 → 413
    IG; Immunoglobulin
    cd05758
    Location:415 → 512
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  2. XM_040431736.1 → XP_040287670.1  kin of IRRE-like protein 3 isoform X1

    Conserved Domains (3) summary
    smart00408
    Location:160 → 230
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:338 → 413
    IG; Immunoglobulin
    cd05758
    Location:415 → 512
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
Nucleotide Protein
Heading Accession and Version

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