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HCFC1 host cell factor C1 [ Bufo bufo (common toad) ]

Gene ID: 120977671, updated on 21-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSBBFG00005014379
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo bufo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
100 current aBufBuf1.1 (GCF_905171765.1) 8 NC_053396.1 (25958438..26007458, complement)

Chromosome 8 - NC_053396.1Genomic Context describing neighboring genes Neighboring gene emerin Neighboring gene ras-related protein rab7-like Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053396.1 Chromosome 8 Reference aBufBuf1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aBufBuf1.1

Genomic

  1. NC_053396.1 Reference aBufBuf1.1

    Range
    25958438..26007458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040405705.1 → XP_040261639.1  host cell factor 1 isoform X3

    Conserved Domains (5) summary
    PLN02193
    Location:1 → 321
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:446 → 625
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1992 → 2051
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:199 → 252
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:627 → 1009
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_040405704.1 → XP_040261638.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:1 → 321
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:446 → 625
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1993 → 2052
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:199 → 252
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:627 → 1009
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_040405703.1 → XP_040261637.1  host cell factor 1 isoform X1

    Related
    ENSBBFP00005020757.1, ENSBBFT00005022342.1
    Conserved Domains (5) summary
    PLN02193
    Location:1 → 321
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:446 → 625
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1996 → 2055
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:199 → 252
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:627 → 1009
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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