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LOC120943992 acetylcholine receptor subunit alpha-1-A-like [ Rana temporaria (common frog) ]

Gene ID: 120943992, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120943992
Gene description
acetylcholine receptor subunit alpha-1-A-like
See related
EnsemblRapid:ENSRTEG00010002882
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
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Genomic context

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See LOC120943992 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 6 NC_053494.1 (163297562..163330648)

Chromosome 6 - NC_053494.1Genomic Context describing neighboring genes Neighboring gene chimerin 1 Neighboring gene intelectin-1-like Neighboring gene acetylcholine receptor subunit alpha-1-B-like Neighboring gene WAS/WASL interacting protein family member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053494.1 Chromosome 6 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha-1-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053494.1 Reference aRanTem1.1

    Range
    163297562..163330648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040357714.1 → XP_040213648.1  acetylcholine receptor subunit alpha-1-A-like

    Related
    ENSRTEP00010002184.1, ENSRTET00010004116.1
    Conserved Domains (3) summary
    TIGR00860
    Location:23 → 441
    LIC; Cation transporter family protein
    cd03558
    Location:147 → 161
    LGIC_ECD; Cys-loop [structural motif]
    cl28912
    Location:21 → 230
    LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
Nucleotide Protein
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