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IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Rana temporaria (common frog) ]

Gene ID: 120943776, updated on 21-Mar-2024

Summary

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Gene symbol
IDH1
Gene description
isocitrate dehydrogenase (NADP(+)) 1
See related
EnsemblRapid:ENSRTEG00010011348
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 6 NC_053494.1 (126362176..126405920)

Chromosome 6 - NC_053494.1Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 7 Neighboring gene 1-phosphatidylinositol 3-phosphate 5-kinase-like Neighboring gene gamma-crystallin 1-like Neighboring gene chromosome 6 C2orf80 homolog Neighboring gene shugoshin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053494.1 Chromosome 6 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053494.1 Reference aRanTem1.1

    Range
    126362176..126405920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040357322.1 → XP_040213256.1  isocitrate dehydrogenase [NADP] cytoplasmic

    Related
    ENSRTEP00010014480.1, ENSRTET00010019307.1
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
Heading Accession and Version

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