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PKD1 polycystin 1, transient receptor potential channel interacting [ Rana temporaria (common frog) ]

Gene ID: 120943279, updated on 21-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
See related
EnsemblRapid:ENSRTEG00010005226
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
45
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 6 NC_053494.1 (25664222..25855562, complement)

Chromosome 6 - NC_053494.1Genomic Context describing neighboring genes Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene U2 spliceosomal RNA Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC120943281 Neighboring gene small nucleolar RNA SNORD60

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053494.1 Chromosome 6 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053494.1 Reference aRanTem1.1

    Range
    25664222..25855562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040356488.1 → XP_040212422.1  polycystin-1

    Related
    ENSRTEP00010005327.1, ENSRTET00010008178.1
    Conserved Domains (5) summary
    TIGR00864
    Location:88 → 2704
    PCC; polycystin cation channel protein
    PLN03223
    Location:3799 → 4106
    PLN03223; Polycystin cation channel protein; Provisional
    cd01752
    Location:3085 → 3204
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:84 → 107
    LRR_1; leucine-rich repeat [structural motif]
    cl02559
    Location:2978 → 3027
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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