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CNTN5 contactin 5 [ Rana temporaria (common frog) ]

Gene ID: 120929015, updated on 21-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
EnsemblRapid:ENSRTEG00010009091
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 2 NC_053490.1 (51239626..53243669)

Chromosome 2 - NC_053490.1Genomic Context describing neighboring genes Neighboring gene P2X purinoceptor 7-like Neighboring gene tubulin-specific chaperone A-like Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC120928204 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053490.1 Chromosome 2 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053490.1 Reference aRanTem1.1

    Range
    51239626..53243669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040340187.1 → XP_040196121.1  contactin-5

    Related
    ENSRTEP00010011206.1, ENSRTET00010015212.1
    Conserved Domains (5) summary
    smart00408
    Location:499 → 561
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:208 → 276
    IG; Immunoglobulin
    cd00063
    Location:674 → 769
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:410 → 414
    Ig; Ig strand B [structural motif]
    cl11960
    Location:394 → 478
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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