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ATRN attractin [ Rana temporaria (common frog) ]

Gene ID: 120924531, updated on 21-Mar-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
See related
EnsemblRapid:ENSRTEG00010032020
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
30
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 1 NC_053489.1 (650479439..650816634, complement)

Chromosome 1 - NC_053489.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha 4 Neighboring gene uncharacterized LOC120925052 Neighboring gene uncharacterized LOC120924533 Neighboring gene succinate-CoA ligase GDP/ADP-forming subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053489.1 Chromosome 1 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053489.1 Reference aRanTem1.1

    Range
    650479439..650816634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040335496.1 → XP_040191430.1  attractin isoform X2

    Related
    ENSRTEP00010040043.1, ENSRTET00010053683.1
    Conserved Domains (7) summary
    PLN02193
    Location:434 → 551
    PLN02193; nitrile-specifier protein
    PHA03098
    Location:266 → 491
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:53 → 168
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:979 → 1024
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:421 → 470
    Kelch; KELCH repeat [structural motif]
    cl02432
    Location:709 → 836
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl19567
    Location:193 → 238
    DSL; Delta serrate ligand

  2. XM_040335495.1 → XP_040191429.1  attractin isoform X1

    Conserved Domains (7) summary
    PLN02193
    Location:434 → 551
    PLN02193; nitrile-specifier protein
    PHA03098
    Location:266 → 491
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:53 → 168
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:979 → 1024
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:421 → 470
    Kelch; KELCH repeat [structural motif]
    cl02432
    Location:709 → 836
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl19567
    Location:193 → 238
    DSL; Delta serrate ligand

  3. XM_040335497.1 → XP_040191431.1  attractin isoform X3

    Conserved Domains (7) summary
    PLN02193
    Location:434 → 551
    PLN02193; nitrile-specifier protein
    PHA03098
    Location:266 → 491
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:53 → 168
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:979 → 1024
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:421 → 470
    Kelch; KELCH repeat [structural motif]
    cl02432
    Location:709 → 836
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl19567
    Location:193 → 238
    DSL; Delta serrate ligand
Nucleotide Protein
Heading Accession and Version

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