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FDPS farnesyl diphosphate synthase [ Rana temporaria (common frog) ]

Gene ID: 120920771, updated on 21-Mar-2024

Summary

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Gene symbol
FDPS
Gene description
farnesyl diphosphate synthase
See related
EnsemblRapid:ENSRTEG00010002369
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 13 NC_053501.1 (120917762..120929287)

Chromosome 13 - NC_053501.1Genomic Context describing neighboring genes Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene pyruvate kinase L/R Neighboring gene extensin-like Neighboring gene RUN and SH3 domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053501.1 Chromosome 13 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053501.1 Reference aRanTem1.1

    Range
    120917762..120929287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040333053.1 → XP_040188987.1  farnesyl pyrophosphate synthase isoform X2

    Related
    ENSRTEP00010001728.1, ENSRTET00010003321.1
    Conserved Domains (1) summary
    cd00685
    Location:39 → 350
    Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

  2. XM_040333052.1 → XP_040188986.1  farnesyl pyrophosphate synthase isoform X1

    Related
    ENSRTEP00010001727.1, ENSRTET00010003320.1
    Conserved Domains (1) summary
    cd00685
    Location:98 → 409
    Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
Nucleotide Protein
Heading Accession and Version

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