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LOC120919550 beta-1,4 N-acetylgalactosaminyltransferase 2-like [ Rana temporaria (common frog) ]

Gene ID: 120919550, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120919550
Gene description
beta-1,4 N-acetylgalactosaminyltransferase 2-like
See related
EnsemblRapid:ENSRTEG00010016681
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
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Genomic context

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See LOC120919550 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 12 NC_053500.1 (36634400..36708296)

Chromosome 12 - NC_053500.1Genomic Context describing neighboring genes Neighboring gene neurexophilin 3 Neighboring gene nerve growth factor receptor Neighboring gene prohibitin 1 Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 2-like Neighboring gene uncharacterized LOC120919556

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053500.1 Chromosome 12 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-N-acetylgalactosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UDP-N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053500.1 Reference aRanTem1.1

    Range
    36634400..36708296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040331756.1 → XP_040187690.1  beta-1,4 N-acetylgalactosaminyltransferase 2-like isoform X2

  2. XM_040331755.1 → XP_040187689.1  beta-1,4 N-acetylgalactosaminyltransferase 2-like isoform X1

    Related
    ENSRTEP00010021241.1, ENSRTET00010028319.1
    Conserved Domains (1) summary
    cd00761
    Location:262 → 384
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases