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LOC120917940 carbohydrate sulfotransferase 5-like [ Rana temporaria (common frog) ]

Gene ID: 120917940, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120917940
Gene description
carbohydrate sulfotransferase 5-like
See related
EnsemblRapid:ENSRTEG00010001653
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
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Genomic context

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See LOC120917940 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 11 NC_053499.1 (160122017..160129200)

Chromosome 11 - NC_053499.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120917104 Neighboring gene tyrosine aminotransferase Neighboring gene lysyl-tRNA synthetase 1 Neighboring gene adenosine deaminase tRNA specific 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053499.1 Chromosome 11 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053499.1 Reference aRanTem1.1

    Range
    160122017..160129200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040329572.1 → XP_040185506.1  carbohydrate sulfotransferase 5-like

    Related
    ENSRTEP00010000927.1, ENSRTET00010002139.1
Nucleotide Protein
Heading Accession and Version

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