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KIRREL3 kirre like nephrin family adhesion molecule 3 [ Rana temporaria (common frog) ]

Gene ID: 120915581, updated on 21-Mar-2024

Summary

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Gene symbol
KIRREL3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSRTEG00010014866
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See KIRREL3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 10 NC_053498.1 (123391748..124433854, complement)

Chromosome 10 - NC_053498.1Genomic Context describing neighboring genes Neighboring gene decapping enzyme, scavenger Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene uncharacterized LOC120916106 Neighboring gene ETS proto-oncogene 1, transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053498.1 Chromosome 10 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053498.1 Reference aRanTem1.1

    Range
    123391748..124433854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040326200.1 → XP_040182134.1  kin of IRRE-like protein 3 isoform X1

    Related
    ENSRTEP00010019247.1, ENSRTET00010025555.1

  2. XM_040326201.1 → XP_040182135.1  kin of IRRE-like protein 3 isoform X2

    Related
    ENSRTEP00010019228.1, ENSRTET00010025526.1
    Conserved Domains (4) summary
    smart00409
    Location:338 → 413
    IG; Immunoglobulin
    smart00410
    Location:51 → 140
    IG_like; Immunoglobulin like
    cd05758
    Location:415 → 512
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:160 → 230
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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