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RPL39 ribosomal protein L39 [ Rana temporaria (common frog) ]

Gene ID: 120914570, updated on 21-Mar-2024

Summary

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Gene symbol
RPL39
Gene description
ribosomal protein L39
See related
EnsemblRapid:ENSRTEG00010015932
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See RPL39 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 9 NC_053497.1 (86316621..86328431, complement)

Chromosome 9 - NC_053497.1Genomic Context describing neighboring genes Neighboring gene septin 6 Neighboring gene sosondowah ankyrin repeat domain family member D Neighboring gene small nucleolar RNA SNORA69 Neighboring gene UPF3B regulator of nonsense mediated mRNA decay Neighboring gene NADH:ubiquinone oxidoreductase subunit A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053497.1 Chromosome 9 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053497.1 Reference aRanTem1.1

    Range
    86316621..86328431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040325248.1 → XP_040181182.1  60S ribosomal protein L39

    Related
    ENSRTEP00010020341.1, ENSRTET00010027035.1
    Conserved Domains (1) summary
    COG2167
    Location:66 → 114
    RPL39; Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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