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LOC120909059 pulmonary surfactant-associated protein D-like [ Rana temporaria (common frog) ]

Gene ID: 120909059, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120909059
Gene description
pulmonary surfactant-associated protein D-like
See related
EnsemblRapid:ENSRTEG00010009056
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
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Genomic context

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See LOC120909059 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 8 NC_053496.1 (127461726..127486887)

Chromosome 8 - NC_053496.1Genomic Context describing neighboring genes Neighboring gene RasGEF domain family member 1A Neighboring gene uncharacterized LOC120909058 Neighboring gene U6 spliceosomal RNA Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053496.1 Chromosome 8 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053496.1 Reference aRanTem1.1

    Range
    127461726..127486887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040320683.1 → XP_040176617.1  pulmonary surfactant-associated protein D-like

    Related
    ENSRTEP00010011148.1, ENSRTET00010015147.1
    Conserved Domains (2) summary
    pfam09006
    Location:106 → 151
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerisation
    cl02432
    Location:144 → 259
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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