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LOC120905836 irregular chiasm C-roughest protein-like [ Anopheles arabiensis ]

Gene ID: 120905836, updated on 26-Mar-2024

Summary

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Gene symbol
LOC120905836
Gene description
irregular chiasm C-roughest protein-like
See related
VectorBase:AARA21_002663
Gene type
protein coding
RefSeq status
MODEL
Organism
Anopheles arabiensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
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Genomic context

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See LOC120905836 in Genome Data Viewer
Location:
chromosome: X
Exon count:
9
Annotation release Status Assembly Chr Location
100 current AaraD3 (GCF_016920715.1) X NC_053519.1 (5766831..5847091)

Chromosome X - NC_053519.1Genomic Context describing neighboring genes Neighboring gene SET and MYND domain-containing protein 4-like Neighboring gene irregular chiasm C-roughest protein-like Neighboring gene tektin-3-like Neighboring gene xylulose kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053519.1 Chromosome X Reference AaraD3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anopheles arabiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaraD3 Primary Assembly

Genomic

  1. NC_053519.1 Reference AaraD3 Primary Assembly

    Range
    5766831..5847091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040317059.1 → XP_040172993.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A182IAD8
    Conserved Domains (4) summary
    smart00408
    Location:272 → 331
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:51 → 145
    IG; Immunoglobulin
    cd00096
    Location:428 → 432
    Ig; Ig strand A [structural motif]
    cl11960
    Location:427 → 515
    Ig; Immunoglobulin domain

  2. XM_040317058.1 → XP_040172992.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A182IAD8
    Conserved Domains (4) summary
    smart00408
    Location:272 → 331
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:51 → 145
    IG; Immunoglobulin
    cd00096
    Location:428 → 432
    Ig; Ig strand A [structural motif]
    cl11960
    Location:427 → 515
    Ig; Immunoglobulin domain

  3. XM_040317057.1 → XP_040172991.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A182IAD8
    Conserved Domains (4) summary
    smart00408
    Location:272 → 331
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:51 → 145
    IG; Immunoglobulin
    cd00096
    Location:428 → 432
    Ig; Ig strand A [structural motif]
    cl11960
    Location:427 → 515
    Ig; Immunoglobulin domain

  4. XM_040317060.1 → XP_040172994.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A182IAD8
    Conserved Domains (4) summary
    smart00408
    Location:272 → 331
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:51 → 145
    IG; Immunoglobulin
    cd00096
    Location:428 → 432
    Ig; Ig strand A [structural motif]
    cl11960
    Location:427 → 515
    Ig; Immunoglobulin domain

  5. XM_040317061.1 → XP_040172995.1  irregular chiasm C-roughest protein-like

    UniProtKB/TrEMBL
    A0A182IAD8
    Conserved Domains (4) summary
    smart00408
    Location:272 → 331
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:51 → 145
    IG; Immunoglobulin
    cd00096
    Location:428 → 432
    Ig; Ig strand A [structural motif]
    cl11960
    Location:427 → 515
    Ig; Immunoglobulin domain
Nucleotide Protein
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