U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Hcf Host cell factor [ Anopheles arabiensis ]

Gene ID: 120898689, updated on 24-May-2024

Summary

Go to the top of the page Help
Gene symbol
Hcf
Gene description
Host cell factor
See related
VectorBase:AARA21_008583
Gene type
protein coding
RefSeq status
MODEL
Organism
Anopheles arabiensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Hcf in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current AaraD3 (GCF_016920715.1) 2 NC_053517.1 (64274983..64287967)

Chromosome 2 - NC_053517.1Genomic Context describing neighboring genes Neighboring gene Ras-associated protein 2-like Neighboring gene trypsin-1-like Neighboring gene SLIT-ROBO Rho GTPase-activating protein 1-like Neighboring gene xaa-Pro dipeptidase Neighboring gene FAST kinase domain-containing protein 3, mitochondrial-like Neighboring gene Pre-mRNA-splicing factor Slu7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053517.1 Chromosome 2 Reference AaraD3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
host cell factor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Anopheles arabiensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaraD3 Primary Assembly

Genomic

  1. NC_053517.1 Reference AaraD3 Primary Assembly

    Range
    64274983..64287967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040304863.1 → XP_040160797.1  host cell factor isoform X1

    Conserved Domains (6) summary
    PRK14708
    Location:675 → 927
    PRK14708; flagellin; Provisional
    PTZ00341
    Location:1260 → 1432
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
    PLN02193
    Location:15 → 327
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:423 → 585
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1742 → 1772
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:144 → 202
    Kelch; KELCH repeat [structural motif]

  2. XM_040304866.1 → XP_040160800.1  host cell factor isoform X2

    UniProtKB/TrEMBL
    A0A8W7MUE2
    Conserved Domains (6) summary
    PRK14708
    Location:673 → 925
    PRK14708; flagellin; Provisional
    PTZ00341
    Location:1258 → 1430
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
    PLN02193
    Location:15 → 327
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:421 → 583
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1740 → 1770
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:144 → 202
    Kelch; KELCH repeat [structural motif]

  3. XM_040304864.1 → XP_040160798.1  host cell factor isoform X1

    Conserved Domains (6) summary
    PRK14708
    Location:675 → 927
    PRK14708; flagellin; Provisional
    PTZ00341
    Location:1260 → 1432
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
    PLN02193
    Location:15 → 327
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:423 → 585
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1742 → 1772
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:144 → 202
    Kelch; KELCH repeat [structural motif]

  4. XM_040304865.1 → XP_040160799.1  host cell factor isoform X1

    Conserved Domains (6) summary
    PRK14708
    Location:675 → 927
    PRK14708; flagellin; Provisional
    PTZ00341
    Location:1260 → 1432
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
    PLN02193
    Location:15 → 327
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:423 → 585
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1742 → 1772
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:144 → 202
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases