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ACOD1 aconitate decarboxylase 1 [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120883023, updated on 21-Mar-2024

Summary

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Gene symbol
ACOD1
Gene description
aconitate decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
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Genomic context

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See ACOD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070208.1 (51971703..51978880)

NW_024070208.1Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 12 Neighboring gene U6 spliceosomal RNA Neighboring gene CLN5 intracellular trafficking protein Neighboring gene F-box and leucine rich repeat protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070208 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070208.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    51971703..51978880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040266899.1 → XP_040122833.1  cis-aconitate decarboxylase

    Conserved Domains (1) summary
    cl00912
    Location:1 → 450
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

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