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CHIT1 chitinase 1 [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120879883, updated on 21-Mar-2024

Summary

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Gene symbol
CHIT1
Gene description
chitinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
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Genomic context

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See CHIT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070205.1 (78018396..78040089)

NW_024070205.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10-like Neighboring gene uncharacterized LOC120879998 Neighboring gene chitinase 3 like 1 Neighboring gene myosin binding protein H Neighboring gene adenosine A1 receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070205 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chitotriosidase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070205.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    78018396..78040089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040262866.1 → XP_040118800.1  LOW QUALITY PROTEIN: chitotriosidase-1

    Conserved Domains (2) summary
    smart00494
    Location:370 → 415
    ChtBD2; Chitin-binding domain type 2
    cl10447
    Location:9 → 335
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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