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LOC120879849 tight junction protein ZO-2-like [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120879849, updated on 16-Nov-2023

Summary

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Gene symbol
LOC120879849
Gene description
tight junction protein ZO-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
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Genomic context

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See LOC120879849 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070205.1 (42968560..42980163)

NW_024070205.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin associated protein 3 Neighboring gene SCY1 like pseudokinase 3 Neighboring gene 5S ribosomal RNA Neighboring gene FIGNL1 interacting regulator of recombination and mitosis

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070205 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tight junction protein ZO-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070205.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    42968560..42980163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040262841.1 → XP_040118775.1  LOW QUALITY PROTEIN: tight junction protein ZO-2-like

    Conserved Domains (3) summary
    cd12027
    Location:421 → 483
    SH3_ZO-2; Src homology 3 domain of the Tight junction protein, Zonula occludens protein 2
    smart00072
    Location:518 → 696
    GuKc; Guanylate kinase homologues
    smart00228
    Location:333 → 404
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
Nucleotide Protein
Heading Accession and Version

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