U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120876957, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GDPD3
Gene description
glycerophosphodiester phosphodiesterase domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GDPD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070186.1 (183202506..183208509)

NW_024070186.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene mitogen-activated protein kinase 3 Neighboring gene yippee like 3 Neighboring gene T-box transcription factor 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024070186 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysophospholipase D GDPD3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070186.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    183202506..183208509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040259247.1 → XP_040115181.1  lysophospholipase D GDPD3 isoform X2

    Conserved Domains (1) summary
    cd08612
    Location:13 → 273
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  2. XM_040259237.1 → XP_040115171.1  lysophospholipase D GDPD3 isoform X1

    Conserved Domains (1) summary
    cd08612
    Location:13 → 337
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  3. XM_040259258.1 → XP_040115192.1  lysophospholipase D GDPD3 isoform X3

    Conserved Domains (1) summary
    cd08612
    Location:13 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  4. XM_040259269.1 → XP_040115203.1  lysophospholipase D GDPD3 isoform X4

    Conserved Domains (1) summary
    cl14615
    Location:1 → 211
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

RNA

  1. XR_005724256.1 RNA Sequence

  2. XR_005724258.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.