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PGAP2 post-GPI attachment to proteins 2 [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120876708, updated on 21-Mar-2024

Summary

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Gene symbol
PGAP2
Gene description
post-GPI attachment to proteins 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
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Genomic context

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See PGAP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070201.1 (49111427..49132237, complement)

NW_024070201.1Genomic Context describing neighboring genes Neighboring gene stromal interaction molecule 1 Neighboring gene 60S ribosomal protein L35a-like Neighboring gene ras homolog family member G Neighboring gene nucleoporin 98 and 96 precursor Neighboring gene uncharacterized LOC120876714 Neighboring gene cholinergic receptor nicotinic alpha 10 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070201 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
post-GPI attachment to proteins factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070201.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    49111427..49132237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040258690.1 → XP_040114624.1  post-GPI attachment to proteins factor 2 isoform X4

    Conserved Domains (1) summary
    pfam10277
    Location:18 → 237
    Frag1; Frag1/DRAM/Sfk1 family

  2. XM_040258688.1 → XP_040114622.1  post-GPI attachment to proteins factor 2 isoform X3

    Conserved Domains (1) summary
    pfam10277
    Location:18 → 241
    Frag1; Frag1/DRAM/Sfk1 family

  3. XM_040258693.1 → XP_040114627.1  post-GPI attachment to proteins factor 2 isoform X6

  4. XM_040258685.1 → XP_040114619.1  post-GPI attachment to proteins factor 2 isoform X1

  5. XM_040258694.1 → XP_040114628.1  post-GPI attachment to proteins factor 2 isoform X7

  6. XM_040258687.1 → XP_040114621.1  post-GPI attachment to proteins factor 2 isoform X3

    Conserved Domains (1) summary
    pfam10277
    Location:18 → 241
    Frag1; Frag1/DRAM/Sfk1 family

  7. XM_040258689.1 → XP_040114623.1  post-GPI attachment to proteins factor 2 isoform X4

    Conserved Domains (1) summary
    pfam10277
    Location:18 → 237
    Frag1; Frag1/DRAM/Sfk1 family

  8. XM_040258684.1 → XP_040114618.1  post-GPI attachment to proteins factor 2 isoform X1

  9. XM_040258686.1 → XP_040114620.1  post-GPI attachment to proteins factor 2 isoform X2

  10. XM_040258692.1 → XP_040114626.1  post-GPI attachment to proteins factor 2 isoform X5

Nucleotide Protein
Heading Accession and Version

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