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gal3st1a galactose-3-O-sulfotransferase 1a [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120831169, updated on 10-Oct-2024

Summary

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Gene symbol
gal3st1a
Gene description
galactose-3-O-sulfotransferase 1a
See related
Ensembl:ENSGACG00000029361
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
human zebrafish all
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Genomic context

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See gal3st1a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 13 NC_053224.1 (9225996..9230819)

Chromosome 13 - NC_053224.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 2 Neighboring gene pescadillo Neighboring gene leucine zipper like post translational regulator 1 Neighboring gene claudin 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053224.1 Chromosome 13 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myelination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylceramide sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053224.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    9225996..9230819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040196398.1 → XP_040052332.1  galactosylceramide sulfotransferase isoform X1

    UniProtKB/TrEMBL
    A0AAQ4R7K2, G3P3X5
    Related
    ENSGACP00000059666.1, ENSGACT00000077703.1
    Conserved Domains (1) summary
    cl22970
    Location:1 → 410
    Sulfotransfer_2; Sulfotransferase family

  2. XM_040196399.1 → XP_040052333.1  galactosylceramide sulfotransferase isoform X2

    Conserved Domains (1) summary
    cl22970
    Location:32 → 368
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases